NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315275_10020662

Scaffold Ga0315275_10020662


Overview

Basic Information
Taxon OID3300032401 Open in IMG/M
Scaffold IDGa0315275_10020662 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6751
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5111Long. (o)-110.3555Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F012770Metagenome / Metatranscriptome277Y
F020863Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0315275_100206621F012770N/ADCHLQFEDSFQLVDHYFEEGEEFDPYYILPNGYKLLLGSLLRFMYNNADKPDQIKLITQSTYVTLFASENGYDLVDELVEDMVVKSALVDFDKNLTRLLETDNNDDEGGA
Ga0315275_1002066213F001507N/AMSTTETKPYTVEQLLNEIYEDNYSHLEFEWSMGGKPCECKICQTMQTIIKYRGE
Ga0315275_1002066214F020863AGGAGMQTKMEDLHRLVAVLEELVKPLLEGEEVPDVYESMKRPHLVLQEGSKTYGRAFRIHFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIHTGQMIAERGKE
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