Scaffold Ga0335398_10145455

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335398_10145455

Scaffold Ga0335398_10145455

Overview

Basic Information
Taxon OID	3300032435 Open in IMG/M
Scaffold ID	Ga0335398_10145455 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2262
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. TMED19	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)		Depth (m)	83
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098713	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335398_101454553	F098713	N/A	EKLKQNRRDNRRDIGKKNEIFKHGIKGIKKITGKYNTSKPLTEVKISCLCGLKWTWQYASPLKEGKEARTLEWIQKCTANFRTHSLKMFQEAMEIKLETLTDMLPLLQATQNPPLDLGIRSLIYDIGPWKGENLFVGIESFFQKNAYHPFTTCGNSDCGKAGPIPLSTTAHNTHPEQTLPTRSIEHFCDGDTCFTTDPKNFRSNRHHIRDRTFLDKAGIFDFRTIASGETTREPVTTFREFSQFIARMPSHKAPRFSEVPADLFKQAPISFQKHIHLLVNEILKGDHDCDTELLMVTVILIHKDKDITILDHYRPIALLNTIYQLIMLIITS

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