Scaffold Ga0335398_10484280

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335398_10484280

Scaffold Ga0335398_10484280

Overview

Basic Information
Taxon OID	3300032435 Open in IMG/M
Scaffold ID	Ga0335398_10484280 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	916
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)		Depth (m)	83
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087884	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335398_104842802	F087884	GGA	MLYKLTVGQYQLLNEIDEDLSAMEQNIYAVSAIKGVTYEEASRIKMVDFSKLVEGLSDFNVRLLEKVRINNSITLGGVKYHIENKPDKLSSGQLLDVLNIRSKNQGKAVEVMDLLLAAMCKPKGKHYGDDGIGLNERAALIRDAKLSEVWNVFVFFWNLWNNYFANTEDSLTKWMEETPKKVQEILDNDGHSSQ

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