NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335396_10051034

Scaffold Ga0335396_10051034


Overview

Basic Information
Taxon OID3300032462 Open in IMG/M
Scaffold IDGa0335396_10051034 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2780
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043258Metagenome156Y
F057120Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0335396_100510341F057120N/ASHQWTDQIDNSTICNYFYIFFIIFSVYAAISLLGGVYIFATTKMAIGMLIAVIFNIILSFGISATTALFLYLICERALKPSMGDKVHNATSQVASASHYEMM
Ga0335396_100510345F043258N/APRFLILDECETLTEAAQLSLQTILNSDPKDICVILICNSQSRIHPKLRQRLLKIRYDPPNRNNKATDIFTAITRGDLRQTVHKSDIEKRIWKYIHCHPSNISSIIQEDNVDFQAIVSEMLLLSDIFSIMDDELINKINLLYPLLIDTTILHDETEDQIVSLIRLFKQKFETKILTN
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