NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348332_11481878

Scaffold Ga0348332_11481878


Overview

Basic Information
Taxon OID3300032515 Open in IMG/M
Scaffold IDGa0348332_11481878 Open in IMG/M
Source Dataset NameFICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1862
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F000825Metagenome / Metatranscriptome874Y

Sequences

Protein IDFamilyRBSSequence
Ga0348332_114818781F000823GGAGGMRVTGLAILVGAAVGAMTAPAMAAWHGYISHPLGFAFAAPGEVKVETGTYTAPVAGQRKTLTYHFSADGVDYKAIAIDMRDIANNAATLVGEAEFVFQDGKKVLNDRPERFDRQFGRKFTIDLPNNGGRVNAAFYFVKGRVISLQASVAGDGDYGTPDLGRFVDSLTFQTIRAADDAIELPAPPK
Ga0348332_114818782F000825GGAGMRRWMLATVAGVAITMATMPAQAAWKSYVNKEIGFSFSAPGEVKTSLGTFRGQESGPRQTIVYRSQEDDIEYRVTVMSFMQAQAEGATILGERQWMFTNRKDVLMDAFARVDPGKDAVYGRKIVVNLPDSKGRVTGAFYFNKGKLIVLEATVLPAHGDYNSPYPMRFIDSLAFNLSRTESGAVELTTPELE
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