NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348332_12585373

Scaffold Ga0348332_12585373


Overview

Basic Information
Taxon OID3300032515 Open in IMG/M
Scaffold IDGa0348332_12585373 Open in IMG/M
Source Dataset NameFICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2053
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016550Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0348332_125853731F016550N/ATMKKTMVRCLVLVFTVALAMAAFADDQEKATKEIKKITSISVDGNMRSVVNRSMADMLKVRRLDLVKERQDLNVNYGGLFLVHQLTAAGAKMEDIAAQLKAGKKILDIANDDHANWKEINSEAKKLNKKIDDNIEKYFMDSKKLAALDQTDEYDAKADHVAADSDISKDEYADAQSRYQHLHDLASSQSPTGDANTKNPGGLSAASAPAPSGKR
Ga0348332_125853732F016550AGGAMRTVVTCLSLLVFTVALTLAAFADDQEKATKEIKRITSISVDSNMRSVVNRSMADMLKARRLDLVKERQNLNVNYGGLFLVHQLTAGGAKMDDIAAQLKAGKKLFDIANDDHANWKEINSEAKKLNKKIDDNIEKYFMDSKKLAALDQTDEYDAKADHVAADSDISKDEYADAQSRYQHLHDLASSQLPTGDANGVNQGPGVPPAAASSGKR
Ga0348332_125853733F016550AGGAGGMRTGMTRFFVLVFTVAVAMTAFADDQEKATKEIKQITSISVDANMRSIVNRTMADMLKAKRLDLVKERHDLNVNYGGLFLVHQLTAGGAKMEDIAAQLKAGKKIFDIANDDHANWKEISSEAKKLNKKIDENIEKNFRDAKKLAAVDQADQYNAKSDKVAADTDISKDEYAEAQSRYQHLHDKVVASSQLPTGDANVKNSGANAPGVPGVQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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