NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314667_10085894

Scaffold Ga0314667_10085894


Overview

Basic Information
Taxon OID3300032520 Open in IMG/M
Scaffold IDGa0314667_10085894 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb1_24May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000797Metatranscriptome886Y

Sequences

Protein IDFamilyRBSSequence
Ga0314667_100858942F000797N/AMKEDPKKTSNPKELAILKYQKTNSVGIFACDASSVFSDQSLDIGGASTTAVTPAGEFKSIMRKDKPELYLNTPVFMGAWKQIKAEGVYSSFSWTVKADVPTVFLPSLLKTRLAQFPETPTGTYVETCNKVLMGYFGNLEVTSKTGMKRFLEQFESYYVNGGKCWKGDTDDCKKQWKYGPWGEDLFMQRAMDDAEVMKKSDFTLTDTGTCPGMRPKADKKNTDFVPSCAQDGVFKFVAVHPMRNVSAWTECYKTFSART
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