NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0352983_1031039

Scaffold Ga0352983_1031039


Overview

Basic Information
Taxon OID3300032541 Open in IMG/M
Scaffold IDGa0352983_1031039 Open in IMG/M
Source Dataset NameMetatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078088Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0352983_10310391F078088N/ASTRIYCIIILKRLRSQRLEPRGKTRHQISLCDDGADEVVDTALVLATDKTDVTLLTPAVTPGVLDDPVLSASLNTITNKKDTVVHASRRARGVIDTAAVEAPVGGIKSNRERTVGVKSSDHAVLISIDEAPAGEVVLDVALVELASLINTDIRIIVLSNHTNADSIGESIGHETTIAARVANLLGSAREDHAILLAIDELLLRDKRKLLVGKEVGTLHATSGRESPAGTTVGLILDGSDSTLISPVLALRIITETINSKSVLARHLSDGHGTKVLGGELLLSKIGELVKSKAALALTVEVTDKSEVALESVVAGDVLLSAVVDLAVLDGPVNELIIDISGESTADENCNCNKDC
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.