NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316223_1116471

Scaffold Ga0316223_1116471


Overview

Basic Information
Taxon OID3300032560 Open in IMG/M
Scaffold IDGa0316223_1116471 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001219Metagenome / Metatranscriptome744Y
F092118Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0316223_11164711F001219N/AMILSRTFFVSSSGLFDFDLTFPTQALLFLILSFAVTFFFISPISKQLDARAQFINYNLRKSTILLAFGYEKLSKCVGLLAEEIDEMNRQVKLVKDYTNHQFDSEVELIQQENLDILNELKGDLTIKSAFIFETVTKDLDTRTESFFSQRFQSD
Ga0316223_11164712F092118N/AMTIMICNLSNSFSLFLNNEEPFIEFNTNILETNLVNIILLICLLLYANKVSFSISLKQRQADIVQTIENAQKDVVDASNYYFLAEKGFTQSLFWLQSWRNFYQKEKLTIVTSKYEAAKK
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