Scaffold Ga0316222_1009841

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316222_1009841

Scaffold Ga0316222_1009841

Overview

Basic Information
Taxon OID	3300032561 Open in IMG/M
Scaffold ID	Ga0316222_1009841 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6772
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053027	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316222_10098414	F053027	AGGA	MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVPVTTLRGKFERIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAIELIRYMHLMASTDYTAPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSILDAVRNTDHPVPGSHCEDCIGKRCRSLAHA

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