Basic Information | |
---|---|
Taxon OID | 3300032562 Open in IMG/M |
Scaffold ID | Ga0316226_1185890 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 877 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F060487 | Metagenome | 132 | N |
F071820 | Metagenome | 121 | N |
F094802 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0316226_11858901 | F094802 | N/A | RLYHLATNTTGLVRDYAQDGIRSLEQNVKRWRARMLPYDSAHGILQLGRLKVLHGYFAGNNAAQQHARVYGNCLFGHTHSIEVNAVASLDPSEARGIGCLCIRDMDYVSSKTGKLRWAQGWAYGFLFPDGTYQLFQARKINNKFHVATEIKSY |
Ga0316226_11858902 | F071820 | N/A | MSRQRSKATSWASLLQHEIKATEKKPVGKGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA |
Ga0316226_11858903 | F060487 | N/A | EWLRLTMMKNKRTPSKVSQVKELQAQIKHLEMIVASRELDVEILEEQINTMQHNRLLNRVKRFFLRDTTL |
⦗Top⦘ |