NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0352982_1041023

Scaffold Ga0352982_1041023


Overview

Basic Information
Taxon OID3300032596 Open in IMG/M
Scaffold IDGa0352982_1041023 Open in IMG/M
Source Dataset NameMetatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-3 rumen fluid (Eukaryote Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078088Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0352982_10410231F078088GAGMRLRHQIHLCADGADEVVDTALVLATDETDEALLTPAWTPGVLDDPVLSATLLTITNKKNTVVHASGRAGRVIDTAAVEAPVGGIKSNRERAVGVEGSNHGVLIVIDEAPLGEVILDLALVELASLVNTDIRIVVLRDHTDTDSIGESIGHETTVATLITDLLSGTREDHAILLAINKLLLRDKRKLLVGNKVGTLHAASGRESPAGTAVGLILDLGDGTVVDPVLGRRIFNRSIITKSLLAGHLTDGDSAEVLGGELFLSKISKLVKSESGLTLTVKVTDKSKVALESVVAGDVLLSAVVNLVVLDGPVNELVIDVSSESAADEKSKESDCLHYNTLQT
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