NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314671_10253752

Scaffold Ga0314671_10253752


Overview

Basic Information
Taxon OID3300032616 Open in IMG/M
Scaffold IDGa0314671_10253752 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_26May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)950
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011303Metagenome / Metatranscriptome292N

Sequences

Protein IDFamilyRBSSequence
Ga0314671_102537521F011303N/ASQVETWVDDFLEAMQSPPDWKRLQEMMNKRCTVEMPNEPKCKKFDDWKKKAEVNYASYKNAKRSMPKGAKPIIVQAKKDEVEVIFPEQCVFVWTKGLEEIYPNCTIASGEKSKIFIYNRVLLNAKGECSYFQPVFSINDFKGADRAEDTDSLLDQIFEEFSAENERFSDDMKVEFPVVGKMDKAQMFDLLSKFGGCKRSLMKGCPPVNMSTGKDEVFEGIIPAVYNFKWSAALNDAFKLELADGADVELKSYDCIKIKSGKVIAYAPHFDAQCNIKPAGKSGAA
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