Scaffold Ga0314683_10628021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314683_10628021

Scaffold Ga0314683_10628021

Overview

Basic Information
Taxon OID	3300032617 Open in IMG/M
Scaffold ID	Ga0314683_10628021 Open in IMG/M
Source Dataset Name	Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_22May_surf (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	660
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location Name	Norway: Bergen
Coordinates	Lat. (^o)	60.2696	Long. (^o)	5.2187	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005441	Metatranscriptome	400	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314683_106280211	F005441	N/A	SKATSTLRTRADLANSEVVNLVKKLARQHHSAALAQLASRIAVVVKYGGRDGADPFTKVKGLISDMIAKLEKEADSEATEKAYCDEQIAKTEAKKSDLESDIAKLTSKIDTAAAKATQLKEEVKELQAELASLAKMQAEMDNIRAESHAAYSTAKAELTEGLTGVRKALSVLRDYYGSAAAAMLQQNRQVMEQPAVPEMHEKASGAGGSIIDILEVCESD

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