Scaffold Ga0316221_1020483

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316221_1020483

Scaffold Ga0316221_1020483

Overview

Basic Information
Taxon OID	3300032665 Open in IMG/M
Scaffold ID	Ga0316221_1020483 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3218
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055534	Metagenome	138	Y
F056266	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316221_10204837	F056266	N/A	MQSAIENTVLEFMRESEAREWVERYRKKAKELGYGEANAWWSDTIEAIEKKRGKKEAENLRQRMNRIRGNK
Ga0316221_10204838	F055534	AGGAG	MRNHYNHEELEAARILDLVRMGDDSVPWTAITWALWVLGDAVCN

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