NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316229_1148912

Scaffold Ga0316229_1148912


Overview

Basic Information
Taxon OID3300032676 Open in IMG/M
Scaffold IDGa0316229_1148912 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)953
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029972Metagenome186Y
F058633Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0316229_11489121F058633GGAMSFLERTLAAYQNDEPITKYIEEALMKGDVFPEEYPVKVYNKERKFDNMYHPSSDVTAGELRLYYKFHPELRLQCQEERISPTLAMTFQVGSVFHSVVQNLLIHLGFTTID
Ga0316229_11489123F029972N/AKYQQRFSQRQERELEEEWPLAHRTVGSGNKWEKGDLSTDEQHNISFVVEAKATQAASYSITKKTWDTIREHAQNRSWLARPILAIRLYGPTMEKTNWGGERENTPDTLPVELDLICMDKNDFLELYYDYLRLKEKE
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