NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214485_1023192

Scaffold Ga0214485_1023192


Overview

Basic Information
Taxon OID3300032698 Open in IMG/M
Scaffold IDGa0214485_1023192 Open in IMG/M
Source Dataset NameMetatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048039Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0214485_10231921F048039N/AMGNTVHNAVVKTFAEGTLPGCMGPCYIQPDQMQYTLLEVSMAADLSAQNSQAGIRNSQTPPQMTTAASAGTADPIYSTTPPIATTVQDGSASVFPKGWNTVTGYGMHPNFFSTPPKMQFNVLASQPIASQPDPSAVQPMGAQQDALATQLNAQSAWSPQQMAQANASAPPTMTPQQRLAILL
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Institute for Fundamental Biomedical Research
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