NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314714_10072129

Scaffold Ga0314714_10072129


Overview

Basic Information
Taxon OID3300032733 Open in IMG/M
Scaffold IDGa0314714_10072129 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb12_26May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1633
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007958Metagenome / Metatranscriptome341Y

Sequences

Protein IDFamilyRBSSequence
Ga0314714_100721292F007958GAGMAKIIRSRRLDVRQLMAGFDRSHKGFFDLATLRRALSNAFGAQWTELAMTTAEFAEVTEPYLTRAPLQAGEPMALVQWRQLAQDLQMLAETGRPTADFLERLAMIEARERATKMLERDYGVTSDELKLAFEYFKERINVYSKRGLTDGFRRIDNDHKGSLQGEELRTFFMEESSPPWYCNDRTIAVLVDFADLNDDDSIGYLELSQVIECDDVIEFAALVPNKKAKSQDKKDKEMKIGTRGCTVGQVKEAQQLITERLINRGSGDLRQNNLRSVLAYLDTYENGMITRQEMYTKLKSLNLIKYVTPEKKTKGDLDLAVVDTLFDIVEEVARKIEEMMPGDQGGSVEEGKINLAAFAKGCFSQDGLGGFVSIFEVAGIQ
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