NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325410_1000415

Scaffold Ga0325410_1000415


Overview

Basic Information
Taxon OID3300032735 Open in IMG/M
Scaffold IDGa0325410_1000415 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43842
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (26.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008251Metagenome336Y
F016904Metagenome243Y
F063214Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0325410_100041524F063214N/AMLTTNQVSFIEQVSVIPYGLGYESAKYLLYQGYAT
Ga0325410_100041525F016904N/AMLLIKPKNTRIQKRRLKSNLSILWLSLVDQFMRLIEGSITGMKDCSWLINCSVVATEIMICHAKDVRNSCSTA
Ga0325410_100041527F008251N/AMDTTLEKLKKYFPALPPNAIAKIYRARCARLRLLMNHGILEDILWLIEAKVRLSGESSNSFISYMPKTGKSNFAKKRCAKRLKLYHRCAKWTCNAQCRSLGMVFINRKDKIQFIKEGLSKGSLDNLLLTLETHLSGDVHRAIHDL
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