Basic Information | |
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Taxon OID | 3300032770 Open in IMG/M |
Scaffold ID | Ga0335085_10000180 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 198001 |
Total Scaffold Genes | 161 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 116 (72.05%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5052 | Long. (o) | -80.2345 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001328 | Metagenome / Metatranscriptome | 721 | Y |
F006442 | Metagenome / Metatranscriptome | 373 | Y |
F095904 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335085_10000180123 | F006442 | N/A | MENLVFYLIVQFNLIFGVAGLMWPDKLMPVFGLLMFPWPASHRAIRIHGIVAVAGYLLVLTEVLARAHN |
Ga0335085_1000018059 | F001328 | AGGAGG | VAAQFYYCTECHKKHPTHQKLFDTLHDFTKLAPEPCPVCGGPRDLRLTLDFPLGAGDNEYKVVSALLPEKLESWLGEEEEEVTFYPFLVVLETYDGKQFCWMPYWHVTGKEARYGQHAVCLDKRQFESLIGQAEEKELEPV |
Ga0335085_1000018098 | F095904 | AGGAG | MKTKSFVAVTFVFALAMAVLFLPVAGSTVQAHDKCKAFHALVQGVLPTPNPFEPATDTWGGTIFGNLDTEFLQGGISGNDGTEYPHGPISIFKDGLYKACLTTASAWGGPSDCLDSFSYKPQAVVIWPAGESLGSYKATAKIVQGTHRFASASGNLELSGPFIVWPDTNSVFGVSGRWIAEINGKICGVQ |
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