NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000230

Scaffold Ga0335085_10000230


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000230 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)175412
Total Scaffold Genes168 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)139 (82.74%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015004Metagenome / Metatranscriptome258Y
F074181Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000230103F015004AGGCGGMSTAKKLALIAAGYVLAVVGGVAAVAANELFMPADIAQTSPGMVAFGDMILFVLVTGFLGLAPTWFLLRLCFDKSQRTTIAVLLIAAVLGPVSWLAVTAMAVTTTPGGPSLQQVPEFVRMLLGPLIAFGAIPRMVLGPVLLVIEAMAFLQVRGRVTRALLAGATLLDLVPLCLFALHMAGMRS
Ga0335085_10000230155F074181GGAGMHRVWDYIGFAVWFAGLGYIVMWLLNSPDLQMLPPALHVLGVASAMFVPVRLLVRSIGQRRSAQAVPSARKPATVLRPPRRKPAYPIRSVKPRKHFGLRGAPD
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