NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000278

Scaffold Ga0335085_10000278


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000278 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157228
Total Scaffold Genes138 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (76.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005007Metagenome / Metatranscriptome415Y
F051290Metagenome / Metatranscriptome144Y
F062092Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000278111F051290N/AMLRKPIQFAVVLTALLHTACSPRDFLTRRFATDLISASAPFKSSQRFVLQTGIVSSRDYPSPEYLVLQHHGWISANSAPCPRDLAPPCWDVLLTPSGVDAIRAALNPGQTGGSPLSIPVARRELVAVTGIAKQGNSGDAEFTWKWVPLNEIGAALYSGDVHYRSVVGFRDYDDGWRMMEGPPRSGQSIDDAIKNADPIP
Ga0335085_1000027864F062092AGGAGMFKRAVVAGVMFAGLMLGLTVLQTKAQDSAAPKGSPDGTEPGHAYRVDFVLTEIEDGKKINSRQYALNLNAGEADQLKIGTRVPVEVKQGEIQYLDVGTSIWCRLRDRKDIPWLANDVMMNVTIEISNFAIPDQQGQSMHPAIRQMKIDSSTIAIVGKQLVVGSVDDPNSKRQYQLEVTATRLK
Ga0335085_1000027893F005007GGAMTIPIRGTSAVVVAAAIVAATAIRLPAYRWFLLISIGIGSGVAAGLYFWHKLRPVKDDDVENKRPLGLS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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