NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000804

Scaffold Ga0335085_10000804


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000804 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78771
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (79.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000169Metagenome / Metatranscriptome1788Y
F011861Metagenome / Metatranscriptome286Y
F018213Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000080432F018213GGAGMIAMLHFATLTVVSIFAAAAALAFAWMLLRAMFLLMKPATARRAPAQQQLVRGTSELARAYAHNR
Ga0335085_1000080434F000169GGAGGMAKKNKLTQVAKKIGGAIGKADRKAHQVVAAGAVAKKELQDIAKQVGALKRQLDKTTKRLKHALR
Ga0335085_1000080467F011861AGAAGMARFEYSVFTKASPALAWLVFSDMHRWNSFANVYGQINWVDGNPWEAGSRLQIELLRPVNATIDHVITTCVPGKKVGWIDHAIGVAMAQWVTFEERALEGTRIHTWGEIVHSGIKIGGHTVEELVASFTRTWYESFRIACDQLVLPGGAGPGSSFYATQ
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