NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10002090

Scaffold Ga0335085_10002090


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10002090 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38680
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F015314Metagenome / Metatranscriptome255N
F023143Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000209013F000335GAGMPASLCTAFTELREYAQLQNQYHDGTIQRAQLAQTSRRTFRLSKRLSASLLSALYSFWVSQNAGLTPFAFYNPFDVASGQQIGSNYDPTGNNTQGRVTVVFRGNWAQATDVARTNVQGLELVEVA
Ga0335085_1000209015F000451N/AMARFQTVIKHARFVYSPYTATEMQGFAQVLADAIRARIQHGQNIYDQAAAPLKPGLAGRRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDESFPGRRLTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA
Ga0335085_1000209022F023143AGGAGMDWVFMQSPEGEVKEVEATAAELTPLMVAGWRQVPAPAATGPKPATPVQEKK
Ga0335085_1000209023F003186N/AMPTACSTWHCCSARVDGSVINPKTILGEWVTALQSCPDLVTAVGGDGNNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSSIPTGAPSWSSLLHFQIDPNCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0335085_1000209024F002261GGAMGNWPTIEALVDGVMLQTFGEPVVYQPLQAGAAQGDPLTVTAIRHLRPREESGAVANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRAS
Ga0335085_1000209027F015314GGTGGMMLRRESWARLTRGLVPPLYVLRPLQGFTPSDIGDEYPAPAATNKVQLTRARQLYEQRRIGTQAEAEREISKLPKQEPAKPGKEKRHGSQSGKNTR
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