NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10003086

Scaffold Ga0335085_10003086


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10003086 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29658
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (56.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016192Metagenome249Y
F050618Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000308622F016192GGAMKTLLIACVILCAAAAFGQAGTSALSGQVTPLQIVDHPEHASYTKMATESPLVGGASDTYSYGQGEQPLWEFGPVSQSVPLGDVARAYRKDRAAAKKAEKILEKQGS
Ga0335085_1000308624F050618AGGAMKLCRTHLVRACLFLLAAVPAYCQRGTFGIDVGQTSDKFDSLSSVGGLVVGIDGQLTVIKGKETRPSIVGGGEIRSPSDTGNHAREYAVFGGLHFQARGLLIGFNVQLRQITLPTANVDNQFFARDRMRLLEVPLVINYKFGPNKRAFVEAQGAPEFTPHWHRPSSNQVALPNPRLDHGYFIRGTIGYTFAKWYYVKATYENRYFKFVPDLGNPNNLYNWKTNLISGGIGFTF
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