NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10005163

Scaffold Ga0335085_10005163


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10005163 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21200
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (92.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000739Metagenome / Metatranscriptome913Y
F015120Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000516311F000188AGGAGGMNVKPELAFDVCWEVYRGAREVMESKRGIAALNLEMETKYAWRPDVRPRMKDWVADFALAGQAALEGPQWASRMVMFRLYYLGLVPYERARHFLGLSERGWVNWSEEVRRRCGAEILRRGMFPPRKYFGEQSDSRDQKSDIGETVAETGTWG
Ga0335085_1000516320F015120GAGMVFAFLKKAFQTRYVGMLEGEVLRLRMENRALMNSLLGTAGFPPVEFAEPAKPVELPRMRRRSWQQIQRKNEIEARQDAETMK
Ga0335085_1000516325F000739AGGAGMRLRRVEIWLKGMVAAGISGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPGDEVRTYRDGEAREERG
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