NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10006963

Scaffold Ga0335085_10006963


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10006963 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17691
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005269Metagenome / Metatranscriptome406Y
F010204Metagenome / Metatranscriptome307Y
F018587Metagenome / Metatranscriptome234Y
F018838Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000696324F005269GAGLLRLNFVGPFANGFLLTINDSSASYAIIRYNIRTYRSAGVVAVIGGKDQAELELKKFEDAQDSSDRHEGWRYLIDKTDLKAGTDPAEATLHRQAELEKRESKAMRDPESPDFPSQHRQR
Ga0335085_100069634F018587GGAGMDTVLRALVVRARSLRAFIAASLRKMLRMEPRDGDFASQRVCPFCARITPRYETCCLECGKALKAA
Ga0335085_100069635F010204AGGAGGMRSFSEQTSVLGPIYRLVGEGLNDDDIAVKLDLTEAKVRGCIAWIVRFLELKNRQELVLCASRAA
Ga0335085_100069639F018838AGGAGMLPKQNKQQNQKCFQIHKNGAPVDGVSYATLVEASAALEKAGQGGEVTAVDGLDQIVRRYTADECRNARNSR

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