NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10011776

Scaffold Ga0335085_10011776


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10011776 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12942
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004247Metagenome / Metatranscriptome447Y
F030015Metagenome / Metatranscriptome186Y
F052088Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1001177612F004247N/AMPGLEVRTVITVLTVDAALQHICAIFRERADRGDISPTERDLLVDGAVLLAMCVDDLAQDGHLGPHSGSAEGPLPEPAGRHERHAVAAAA
Ga0335085_1001177613F052088AGGAGGMMRLRAHRRNLVVWSPPVGSAGRYGAPKLARLALTRRIHRGIRTGALLMVIGLMRLARAVGPRWRPLLAGGVLTVVGGMLRGAWGVVFLPGLLFLLSAPLVPAGPTTDRVRRAELERGLGVFSHPAQRRLASQAIALYDKQFPGF
Ga0335085_100117769F030015AGGAGGMAQTEAGHRRNWKKWLAISLAVAAVVYLIMFLVFFSHGGGGGGLGY
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Institute for Fundamental Biomedical Research
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