NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10013325

Scaffold Ga0335085_10013325


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10013325 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12060
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000532Metagenome / Metatranscriptome1046Y
F001463Metagenome / Metatranscriptome690Y
F016424Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1001332513F001463AGAAGGMILLEKQPPLVEDLRKHTPEQMAELRLLLTAGISGRPDTRRPGFYELDGTDNVYYIFRYPTGHKVLLVAAWQRGFDPVAEMVAMSRPAA
Ga0335085_1001332514F016424GAGGVAKSASKSPRKTVRDEKSEFGKDRRRRHHHYLVTVNYADGETFGRVYTDKEKATRFAERQRRSPIVKSARVTQVS
Ga0335085_1001332516F000532AGGVALIKQRLNIDAICTPGKTGQFDVLVDGERVAQRGGNWLTRSFGAGYPDLQKVIEQLAEKNRPGTAR
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