NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10031561

Scaffold Ga0335085_10031561


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10031561 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7378
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008041Metagenome / Metatranscriptome340Y
F051344Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_100315612F008041AGGCGGMRKIMTCALNSRKGHAGTPLQRWPRVAYMRDGLFQAEEFGTATRTTATIIFICPYSAPIQKVRFAIRRFLRRGYHVLAYQTTEAVFTAADPMILPELISQVREDIRSRIAKLSSEGVTEFGFFGSSLGSFILYNCVGREIPELRWGVFNTGGNIARGMWNMPTLRQLHEARGWSLPRLEEAWAELQWPDFGRLDGCRFVFASSRRDDIAPLRDISQYLGPMLRAGAEVSVREVPAIGHRTTVIAGLWRGPQLVRTVRPARPM
Ga0335085_100315617F051344AGGAGGMSLWRIRIAMSDDPRSQELLTEALAGQRVCSQLMSPRDTQMTVDVVVEPADVDGLGALLGELHMISPQVFVSSADQPSSLATA
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