NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10034972

Scaffold Ga0335085_10034972


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10034972 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6947
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_100349723F009917GGAMGTSGWMNLVVVFSLGAQFVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAERQGIEIEETPIVNYVDLANGGGRHR
Ga0335085_100349725F007488N/AMKIREYEERDLEELRAIHARQGFGYPFPDLGNPLFLTKLVLGREEGAKGIVAASLLRLTAEAYLLLDPEEGSPRERWQWLLGLHEATRRDALARGLEDVHAWLPPEIATKFGKRLTRLGWVRDDTWVPHCKKLVME
Ga0335085_100349726F000781GAGGMLTVAQLAPLKNRDPYLYETLAKIVAAVNATSANSGVDPSNPSPAPPPIAGLAVQAANGWFDLAIADPSVTRPGLFYFAESDTTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSMASAPVTFGSPATAVAGGGTAGPTPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQSVL
Ga0335085_100349727F084509GGAGGMPSYGNVVPPVSVGFGESATVIASTDTIYPAPYKSAQVALAPAFSSGKIRVSVELQWSGAPGAISVQLQTADTDIDAAYVQEGSAITTVNSGNVTRAEFPDVVAKFARIYVATLANNVTATGKISS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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