NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10036347

Scaffold Ga0335085_10036347


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10036347 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6799
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020964Metagenome / Metatranscriptome221Y
F083163Metagenome113Y
F092611Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_100363474F092611GGAGGMNAQGMATLIEEILGALSAVGPLGVELYLKLESLFNLSSDEQANVAAAIKTGLAADSDTIAAIEAWKQKVGL
Ga0335085_100363475F083163GGAGGMKKLLVILLISLLATAACIHKQSGPVSAWERVNVNMAALAQINNAVAKGVIAVQQTGTITPQQAAPILAYQELVAKDHAAIENVLSAGSTQAASQSAQVQALLNEIKNQGTALIQSGGLGIKNPQSQQTFTQDLQGVINLAGVILADFQLAEGK
Ga0335085_100363477F020964GGAMTTELEEQLAGKRSFSSAKQPLVLRVTDSDFQREVLEKLGRLEAQMETLVGSYQPGRMKLAEDRLVALERSDIKRGVYDRIVNAVIAVVVSAAIAMHDHLGIR

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