NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10462250

Scaffold Ga0335085_10462250


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10462250 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium 13_1_40CM_2_61_4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000299Metagenome / Metatranscriptome1341Y
F011193Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_104622501F000299N/ANGSLRPVERYDVGHVQEVIRQAHGELRQLLQQRAEIMKRIGTVKQTISGLANLFGDGVLNEELMELVDRKSSGRQPGFTKACRMILMQAGHAMNARDICDYFHQKMPALLARHKDPMASVTTVLNRLVDYGEAQAVIANGRRAWRWVADLPAENPATASEAGMVA
Ga0335085_104622503F011193N/AKKIVFIAYNGKAVARDVHIVGQRSDGSLVEGLVGGESVITTAPATLKDGDKIKIKGQS
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