NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10474642

Scaffold Ga0335085_10474642


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10474642 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1433
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014295Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_104746422F014295N/AMVTSVPPVLVTVSERDLLFPTVTLPKLRLPGLAPRVPVATPAPDKGIVRLGFDALDAMVMLPLALPADDGLKKTVKFALWPAAKVSGAEIPLMLNPLPLIAT
Ga0335085_104746423F014295N/AVLVTVSDRDLLLPTVTLPKLRLAGFAPSVPGVTPVPDKGMVSAGFEALDVIVMLPLALPADDGANEMEKLALCPAVSVTGVVIPLKLNPVPLTPT
Ga0335085_104746424F014295GAGMVTLPKLRLAGLAPSVPGVTPVPDNGMVSVGFDALDVMVALPMALPADDGANETLKVALCPAVSVTGVVIPLKLNPEPLTAT
Ga0335085_104746425F014295N/ALLPTVTLPKLRLAGFAPSVPGVTPVPDKGMFSVGLEALDVIVTLPMALPADEGANETLKVALCPAVSVIGVVIPLKLNPEPLTAT
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