NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10000021

Scaffold Ga0335082_10000021


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10000021 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)159608
Total Scaffold Genes156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F008829Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_10000021150F008829GGAGMRRLFIYAFAVLLSSSALAQVKKSRPERRPANSSENLARTIEPQKQPPYDYFSILDGGPVLMTLHHDTVAGTNEPVDVYQFVIELQVMNSDGNFEPEGLQIFNFYTAKAVNPNTAPNPNNAKDCVKWFNIVNNEIKTRPPNAPTWPYVEFTVAEGARMLQTNEDGPVWWSDDIECWASRDRFPPF
Ga0335082_1000002148F000072AGGAMDAEQIIADIEFLERIFAAPDTRPPSPSDLSAANRRHDERLAHSPWFRLWQSYGICCRTESQSSDSPIGS
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Institute for Fundamental Biomedical Research
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