Scaffold Ga0335082_10000669

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335082_10000669

Scaffold Ga0335082_10000669

Overview

Basic Information
Taxon OID	3300032782 Open in IMG/M
Scaffold ID	Ga0335082_10000669 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	35479
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000978	Metagenome / Metatranscriptome	815	Y
F013561	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335082_1000066910	F013561	GGAGG	MSDVQVDLLKSFRDFIKTAEDGAVIPPVDENDLKALHELCVERAKRYCGKDGVISIESTARACSLHANLPAVWLRHTQLRSLYRHGLLTEWQSGTVLNDAVFRLAASIPMRGTQIDADAFLQELRAATVS
Ga0335082_100006694	F000978	AGGA	LQPICCLRCRREIEAGDKSVAVYMFAQTVGVKPRQKSTAQRVCFCPQCAVSLAMGMPPDGALNMVAWEMIRDLVSSEPSLNQAAWESLRGIVGLLPAAKEESSGRYRRVG

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