NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10096392

Scaffold Ga0335082_10096392


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10096392 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2939
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001916Metagenome / Metatranscriptome617Y
F024595Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_100963921F024595N/ALFACVAGLHGDSRQTLLPKLQRGEILQYDVHGRVERTVKTESKVSSMRGPQEFQGDLASLLRLSILEVRAAQHQPWVSAQVELLPGPDTPNPRATIPSSKVSFDILDGGQLGRVTGLEALSPEQRLLWQFWVARFAFGWSLPGNGMKPGEKLKFEEPEVESSLIAELVWEREVSYVRDDKCPVLPAEICAVLLTQSTLKQKSSAKDSTPEDFRLHELKTSGTARGENQVITYVSLKSGLVLRATEDAQQSMDVTVMKTDGTNGVHYNVTATSHLEALFAPSP
Ga0335082_100963924F001916GGAGGMLSDFVINIAGRSFTITSHDIFMTMVSVITGVIFWAALYFSRKRIVLLKRSSGTDQVAAELSRIADALERIANRPADRAIAAAMRRQNQVEPPLRREPKGIVYSLFGR
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