Scaffold Ga0335082_10158475

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0335082_10158475

Scaffold Ga0335082_10158475

Overview

Basic Information
Taxon OID	3300032782 Open in IMG/M
Scaffold ID	Ga0335082_10158475 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2184
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012046	Metagenome	284	Y
F015514	Metagenome	254	Y
F017541	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335082_101584751	F017541	GGAG	MKLPLFQQMVELNRSLDQLAAGLQRLQEVPFFQRELIRHALSDVEIARVYANREFFDNFEKVVEDDARLAYRFQSKFSERVEDRDDIYLEVKSSEERRKRKGLPPRLVILPDWGMSDEDRYDEERARRRTAKGAKKRRTQPQSKGARQ
Ga0335082_101584752	F012046	GGAG	MKKSDLPSAAVPKFAPGRRYRSVQGKVVHWVEHSFEEGSLYIQVRFTDKTELSWRIATRMTIEEADLADWTSGDFKQLRVFVRNERDRNM
Ga0335082_101584753	F015514	AGGA	MHRNVARAYNYLKREHDRIRAACVTILAQKDRHLERRLFSANLDSSRHLHEMLLYEQRLSRSQRRRVLDLNRYGRKLERVMSALLNL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.