NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000130

Scaffold Ga0335079_10000130


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000130 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86877
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (57.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011245Metagenome / Metatranscriptome293Y
F101688Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000013051F101688AGGAGMRKRTLLSRCLFVVMAFAALSVPCWSQGNLRTVLFVKVKVDQEDNWKASVKDYAALMKKAGSEQRFTVWESQTGPMQYAVVWYSEKFKDMGEDNPKLKSSAAELASLFARLNGQTDSLETWIDEMQPDLGIASKEIPAFVRTGRSRVMPGKMDEVKTIFRDQIVPAVKKSGATDYGVAFARFGTPTNEVHSYIGISGWGDFDSPLGAEKGMTAAEWKTFQAKIAGLIENTEWTIWKYHSELSYLPAAK
Ga0335079_1000013057F011245N/AMTNSRLTNSQSGAARIVPVFILLLAAAFGALAMPQYQDRDRDRDRDRMRGDRGQILILGYDRAMRDFGGGNGGRPAPDAVCDAGFVAVAFHVQTGEFFNQAWLDCAPMRDDGSLGQERRTTGRTGSPGGRPVWDAMCPPGLALRGLRGRAAASIDEAGGMCSSVRDIAQRYDNPPTQMTQPVTRPRAGGRPAGTECPAGAVVTGFRSTSGEYMDHLWILCSEIQRSY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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