NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000518

Scaffold Ga0335079_10000518


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000518 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44080
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (91.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000151Metagenome / Metatranscriptome1897Y
F000174Metagenome / Metatranscriptome1764Y
F011326Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000051811F000174AGGMKNVYEVLRQKELELARLEKEVEALRVAAPLLSDEKEAAADTATRPALATGTTTQQPIRIPQPAANANPQPARAAGWEDTAKRWP
Ga0335079_1000051817F000151GGAGGMQTSANRSLAAGMPDNGQAHVQKVVQAAHEELHQLMRQRADIMKRIGTVKQTLVGLANLFGEEVLTDDLLELVDRKPAGRQPGFTRTCRMVLMEATRPLGAREVCEQIQKRVPPVLLRHKDPLASVTTVLNRLVEYGEARTVVGENGRRAWQWISDPPNGADLKGLQPHL
Ga0335079_100005189F011326GGAVADAPSKSRRWTVLASGLLCGVLALVVLFTTRGAFFSPLAVVVVAAIGLAAVLLQRRLYTRGEEEQARGPVWLNVVGVGFALAAVFADILHLGAQVAEIMALGAVGSFAVSGAIVLHAFRKRRAESK
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Institute for Fundamental Biomedical Research
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