NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10003274

Scaffold Ga0335079_10003274


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10003274 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18714
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000391Metagenome / Metatranscriptome1196Y
F062092Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000327410F062092AGGAGMSKRAVVAGAIIAGLMLVLTVSQTKAQDSAAPKGSADGAEPGHAYRVDFVLTEIEDGKKINSRQYALNLNAGEADQLKIGTRVPVEVKQGEIQYLDVGTSIWCRLRDRKDIPWLANDVMMNVTIEISNFAIPDQQGQSMHPAIRQMKIDSSTIAIVGKQLVVGSVDDPNSRRQYQLEVTATRLK
Ga0335079_100032742F000391AGGMTPETQQSESPYCVKIETGTGQTSTVPIAVLTPKQLEVFLQSEFKRLAQEAGVKGARIHVERATAADYEQVLREVSACLRSAKARAA
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