NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10025734

Scaffold Ga0335079_10025734


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10025734 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6743
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_100257341F000696GGAMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQTDPSLQVSITDATAPPNQLPTDLLVPIKLWERPNGSTDDFVEMVDVSQHGGLPARVQDVTLSIWEWRADGIYFLGATQDTEIRLRYSKAYPDFTDATSPVLIRNAQEAIAYATAALAAWARGSPLAEKWDAAASDAIEDLVAQAVRREQQSQRRRRPFSSRSGYTPF
Ga0335079_100257342F000739GGAGMRRLEIWLKGLLAAAVSGAAGGVLTGLAAVGIDPQHFNLQTGTGATLRIALAAALINAIIGVAAYLQKSPLPQDTA
Ga0335079_100257346F000512GAGMILVTRETHDTPETVAIRLARAGGLNRLGEPNYRAIWGWNRLAWIGGKFEDRDPVTGSLLREVVELRQEPKYPAVNRWHIERWVPPEAYGSPRLWYAQTIERENGVSIPALGPYPSHGEYEHCFTLEGPRGEFLQLTPTVAEHVARAIEWSRRHPRVKSRAQLYEREARSERRYESGAYDMLDDAVPAFHNQPFVVAR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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