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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032783 Open in IMG/M |
| Scaffold ID | Ga0335079_10026267 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6674 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015956 | Metagenome / Metatranscriptome | 250 | Y |
| F019749 | Metagenome | 228 | Y |
| F091257 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335079_100262674 | F091257 | AGGAG | MGQKRTRDLPARQAEKRLVKMAAEAARKDCPNPERIGCPSSDAVDAIVGRRLSFPDFDNVIDHIATCGPCLEEYNRQRRRYRLRNIGTVALACAGLLILALFWRYSPRLPHPKTPLAKEVSAPVLTAMLDYRSWTAERSGQGPRRSESPHLTRAQLDLTVRLPIGTEDGVYTVQFRSQNGQLVAEAVGSATWDGMAEALRIRTDLHNVPAGAYTVAIRSANSSFRLYPLVLE |
| Ga0335079_100262676 | F019749 | N/A | MSPIEPSATCLFLRQNAYSTRRAISEPGRSNFGTRQAVPDLRRWKDRMHDPEGIQARPRSEGDSEPNHTPKKRGNLAATLDPLLEPRRKGGRPGRPKGGSNYEWTPETDKLLADLCAKWGAARAKRIVGRKIREGRPAESATSADSLRKAVEYRMAKLGISTELKRRKPEMREAKRWTESQTTALLGALGADATIESIAIRTGHSVKAVRAKIARLDYEVHEIHGFAVFTANSLAALLRVTPRQIRRWKERGWLETVNRRITEECLGQFLRIHSNRIPFESLPREDQIFLIDLGFPCPESAIFKKNVREILDGIGRQRKPRRPLRRGDNTSTDLGRGEENTDGDDGSTVTAGSLSEAN |
| Ga0335079_100262677 | F015956 | N/A | MQRNPRGASLLDRVRQQKERRALEQAKRVPWKHLAETAEEYTDWQVFTLWLRALVDAAGSIPAIVEREMESRTPQLLGRIRPDVTAAAKNQNGGGTRIWQDVSLWAEMNVFIGPRRAGWLEAVRHFSSMSLRSMKAWSHWEDVDRQWRAAAPQSFPVYAEWQREVAAVARLSNPDSIAQHVLDSVRALGGAEWSKLLHSFSDLMAFSLWLELVLDIEGSTSGLVSNELAARYSGFRAPSATESKVLVRALNEWMFKQALPFADREKMLAVLSFHTSHHPAYHAMRNYALHCREVWRDEYPDHRPSFEEWRNAADAYFEH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |