NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10035362

Scaffold Ga0335079_10035362


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10035362 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5736
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010204Metagenome / Metatranscriptome307Y
F018587Metagenome / Metatranscriptome234Y
F049409Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_100353622F049409AGGAMKTSLKSVIATLNRDANQLEHHAQKLKASSPDLSVDLQSDAELIDLRVASIRKQVEILEQWE
Ga0335079_100353624F010204AGGAGGMRCFWEQTGVLGPIYRLLGQGLNDGDIASKLDLTEVKVESCVAWILHVLNLKTRQALVVYASGAA
Ga0335079_100353625F018587GAGGMVPVLHPFLVRVRTSRGFLAASWRKLLGMEPHDGDFALQRICPFCGLITPRYETCCLECGKVLKPA
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