NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10037363

Scaffold Ga0335079_10037363


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10037363 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5579
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010204Metagenome / Metatranscriptome307Y
F018587Metagenome / Metatranscriptome234Y
F018838Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_100373631F018838AGGAGMLPKQNKQQNQMCFQIHKNGTPVDGVSYATLLEASVALEKAGQGGEVTAVDGLDRIVRRYTAEECRSARNSR
Ga0335079_100373634F010204AGGAGGMRSFWEQTSVLGPIYRLVGEGLNDDDIAVKLDLTEVKVRGCVAWIVHFLELKNRQELVLYASTAA
Ga0335079_100373635F018587GGAGMDTVQRPLIVRARSLRAFIAASLRKMLRIERHDGDFASQRVCPFCGRITPRYETCCLECGKVLKPA
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