NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_11728622

Scaffold Ga0335079_11728622


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_11728622 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)611
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001173Metagenome / Metatranscriptome757Y
F009911Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_117286221F001173N/AVGQWIKNLAAAHHAFAETLAERQSLTVPSEDPDYGDLGQAFPPWPGPARDAIVQPPKPEIAPSPQVLQRAADRDADPEAAD
Ga0335079_117286222F009911AGGAGGMTAIAITGMGLTGVLRLTQVQDNLAHVLDYSQADETSGTWTGLACPAHGLTLGTDVDNAVLRHLAAGSEIADLTWEAPDDLAAGHGQAFQAAMRAHHAGDSGRAGQFW

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