Basic Information | |
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Taxon OID | 3300032805 Open in IMG/M |
Scaffold ID | Ga0335078_10000018 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 315599 |
Total Scaffold Genes | 288 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 229 (79.51%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003395 | Metagenome / Metatranscriptome | 489 | Y |
F010701 | Metagenome / Metatranscriptome | 300 | Y |
F012173 | Metagenome / Metatranscriptome | 283 | Y |
F012698 | Metagenome / Metatranscriptome | 278 | Y |
F019184 | Metagenome / Metatranscriptome | 231 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335078_100000181 | F003395 | N/A | TSGGVTASTEMLAAKRHAGVHTPVIVGKMIIANQQMAYAA |
Ga0335078_10000018196 | F012698 | GAGG | MTSQGSASIEMCTSVKRLGFAARQSIRLYGEEFELLSDPFPEAGGIAVQVKAKRTADVRVLQLPATVVQAVRGSRTAA |
Ga0335078_1000001834 | F012173 | GGA | MRTATVGVGMNTPLLPLPISAPIPDAVKKKRVLLIDTSHAKRDLRAEVLRKLGIDVDSAADIMEARLWWKPALYDLVLINMEKGRGQRDKFCDDVRGATPPQRLAFLVGRPEYLAALPNAEEELAAENGDEQDAIRAKSIGATDPGDTTQRWGILEASRRISAVRSASIARTQAIRALPPPPRDSEGRTAKPTTTPTSLDDLLKEELR |
Ga0335078_1000001859 | F019184 | GAG | MATKYRVVQVKGAKPEKFIVVGIDFEKNAIISTSEAMLETEMRGYLQKAGASEKDIRSWLDQARKYPG |
Ga0335078_1000001876 | F010701 | GGAGG | VSLLLLIGLGAIGWAGYSVVTGKGYYKGCPPEGYDRVEDPFKFWAPTIIIFCAGLFAILVSLGVVGLPRR |
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