NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000023

Scaffold Ga0335078_10000023


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000023 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)306151
Total Scaffold Genes282 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)206 (73.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007888Metagenome / Metatranscriptome343Y
F012246Metagenome / Metatranscriptome282Y
F041310Metagenome / Metatranscriptome160Y
F092775Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000023118F007888GAGMSSTAKSYEASRRSTRIRAQIPFRLVSQDPAFPFSEHCHTLVVNIEGCGVRIGQALEPGLPVLLEELPGGQSAAARVANCVPLGTGGKFWLVGLALEQRGNVWCVHPAPADWGSEPKTMAASVAPPKKSQEWPYSVFSSKGEAHPGRK
Ga0335078_10000023211F012246GGAGMHCNSRSKAALAIVLSASLLATGCSAQWISVALADLPVLVQMSLNIGTLVTTLQSGQQLTSAEAAAIQNISAEASKDLNLLQVLYNEYKANPSNAVLQKIQNAIGDINQNLPTLLQAAHIGNAVLSARIGAAVNLILTTVASFASLMPQTATKPMGQKIALKKAALPHPEDLKTAWNHQVCGPSAHGAFDSALSVCMVK
Ga0335078_100000237F041310GGAMNSSTDVTRSSSSVTVRREGRGVWVLTAYGISGLALFGILVYYLSDYLTR
Ga0335078_1000002380F092775N/AMAQPIPNSSGDSSGVPQRRQMMAEQSPQVRGSATSMAQVGQ
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