NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000040

Scaffold Ga0335078_10000040


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000040 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)243870
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)138 (66.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001772Metagenome / Metatranscriptome637Y
F003124Metagenome / Metatranscriptome506Y
F089213Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000004031F001772GGAGMRNRILLVLSGVILLAGAYLAGVRKATVAHAQEPAAYPRQPMQGSVPKSYGRLVAAIPDRIGTGVIFEDEQGTIRFVSINGMKEGELARYDKTPTRGGIPRSYGHLVAAVVNGEGTGLVFEDSAGAIRFVTITGVVEGELTRE
Ga0335078_1000004074F003124N/AMRSTKQVRRSVTLPAQVARQVNKLAKSQRLSDNRMLLELIEEGMEARKQKEKAFFALAERFRASKDAKEVERLGDELGRFVFGE
Ga0335078_1000004084F089213GAGMPPDTPSPQFASSFDIGEEFGTAKKNLPPIRILLIGVGLVLVMAGILAFVQRPQAQASGSIGEISAVEIPNQNAVMAAINVAIKNHGEKPFWIRAIKVELDTGSGALSDEAASAADLDRYYQAFPALKRHALEPLQPETKIEPGGQTIGTIVVSFPVTEAGFTGRKSLRVRVEPYDQPVPLVISQ

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