NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000060

Scaffold Ga0335078_10000060


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000060 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)205123
Total Scaffold Genes175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (68.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000132Metagenome / Metatranscriptome1972Y
F000655Metagenome / Metatranscriptome958Y
F038327Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000060153F000655N/AMIWWFLILGVSTLVVVCVAIALYLRLRRHLQKTHAAHEGTFSEVEHERKPDSIEH
Ga0335078_1000006045F000132GGTGGMLIEKLAAGVVQVQTPIGPRYVMPSFTQRVYLLWMFRNFPILPHAVLSGRQQRLIDRMCSEQRFASMAYADGMDEAPVIGTIEHRPPIAADHLPPRRPVASEANRSLAAEVRQRS
Ga0335078_1000006053F038327AGGAGMRHSRFVTSTPLIAGRLTGLLFAILVVPLNAADSDSCYDVSKEVTLSGTVSSVLHQPAPGMTWGSHLMVETAFGRLDASLGRFGLEGKGALSVNPGQQIELPGVMKTVRDKEVFVVRSVKAKGKTYTVRNEHGVDVSPLARERAAEKGVTL
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